Parent compound or active metabolite?Should the method quantify the parent cytotoxic agent, active metabolites, conversion products, reactive species, or form-specific analytes?
Is tumor exposure required?Do tumor homogenates, tissue samples, cell lysates, intracellular extracts, or plasma-to-tumor ratios better represent the research endpoint?
Is activation or conversion involved?Should the workflow distinguish parent compound, activation products, inactive metabolites, degradation products, and pathway-linked readouts?
Which pathway biomarkers matter?Should exposure be paired with γH2AX, p53 signaling, cleaved caspase-3, PARP cleavage, Ki-67, cyclins, or tubulin-associated readouts?
Is matrix behavior challenging?Could protein binding, formulation effects, adsorption, instability, or tissue matrix complexity affect recovery and quantification?
Single analyte or oncology panel?Does the study need a single-drug assay, parent-metabolite panel, combination-regimen method, or integrated biomarker workflow?